Science
Metagenomics
OTU/ASV tables → diversity, Bray-Curtis PCoA, stacked relative abundance.
Live
Upload a 16S or shotgun count matrix (taxa × samples). SciVue computes DESeq2-style size factors, Shannon and Simpson alpha diversity, Bray-Curtis distances, classical-MDS PCoA, and renders publication-grade stacked relative-abundance bars for the top taxa per sample.
Alpha + beta
Shannon, Simpson, richness side-by-side with Bray-Curtis PCoA.
Top-10 stacked bars
Editable SVG with per-taxon colours and an 'Other' band.
Size factors
Median-of-ratios normalization — same approach as DESeq2.
Who it's for
- Microbiome paper figures
- Gut-vs-control PCoA panels
- Diet / treatment intervention plots
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