Science
Proteomics
MaxQuant / DIA-NN / FragPipe → volcano, GSEA, STRING — in the browser.
Live
Drop in proteinGroups.txt (MaxQuant), pg_matrix.tsv (DIA-NN), or combined_protein.tsv (FragPipe). SciVue log2-transforms, median-centers, runs a limma-style moderated t-test with empirical Bayes prior variance, ranks by signed −log10(p), runs preranked Hallmark GSEA, and pulls a STRING-style neighbour subgraph for the top hits.
Three formats
MaxQuant, DIA-NN and FragPipe outputs auto-detected from header columns.
Moderated t-test
Empirical Bayes shrinks per-protein variance toward a pooled prior — stable for small n.
GSEA + STRING
Preranked Hallmark enrichment and a STRING neighbour subgraph in one panel.
Who it's for
- Differential proteomics figures
- Pathway-level interpretation
- Hit-list characterization
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