Science
Spatial Transcriptomics
Visium · Slide-seq · MERFISH · seqFISH — gene overlays on tissue.
Live
Drop a Visium tissue_positions CSV or a long-format MERFISH/Slide-seq table. Overlay gene expression on the tissue section with viridis/magma colour scales, render cell-type deconvolution pies on each spot, and run Squidpy-style neighbourhood enrichment with permutation z-scores. Multi-sample compare and PNG export ready for figures.
All four platforms
Visium, Slide-seq, MERFISH, and seqFISH from a single uploader.
Deconvolution pies
Per-spot cell-type proportions as small pies on the tissue.
Neighbourhood enrichment
Permutation z-scores for cell-type co-localisation.
Who it's for
- Spatial omics papers
- Tissue atlas figures
- Tumour micro-environment supplements
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