Science
Trajectory & Pseudotime
PAGA · principal graph · scVelo streams · diffusion map.
Live
Export cells from scanpy or Seurat as CSV (cell_id, umap1, umap2, cluster, pseudotime, vx, vy) and SciVue renders PAGA cluster-connectivity graphs, Monocle3-style principal graphs (MST over centroids), RNA velocity stream arrows, and Laplacian-eigenmap diffusion maps. All publication-ready SVG.
PAGA graphs
k-NN inter-cluster edge weights with scaled node sizes.
Velocity streams
Grid-binned arrows ready for figure overlays.
Diffusion map
Power-iteration Laplacian eigenmap (DC1/DC2) for ≤5k cells in-browser.
Who it's for
- Single-cell developmental trajectories
- RNA velocity figures
- Pseudotime supplements
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